1YH3	Hydrolase	date	Jan 06, 2005
title	Crystal Structure Of Human Cd38 Extracellular Domain
authors	Q.Liu, I.A.Kriksunov, R.Graeff, C.Munshi, H.C.Lee, Q.Hao
compound		source
Molecule: Adp-Ribosyl Cyclase 1 Chain: A, B Fragment: Human Cd38 Extracellular Domain Synonym: Cyclic Adp-Ribose Hydrolase 1, Cadpr Hydrolase 1, Differentiation Antigen Cd38, T10, Acute Lymphoblastic Leuk Antigen Cd38; Ec: 3.2.2.5 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd38 Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_strain: X-33
symmetry	Space Group: P 1	R_factor 0.188 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.839 51.491 66.439 108.27 90.47 97.29
method	X-Ray Diffraction	resolution	1.91 Å
ligand		enzyme	Hydrolase E.C.3.2.2.5 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of human CD38 extracellular domain., Liu Q, Kriksunov IA, Graeff R, Munshi C, Lee HC, Hao Q, Structure (Camb) 2005 Sep;13(9):1331-9. PMID:16154090

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (1yh3.pdb1.gz) 44 Kb Biological Unit Coordinates (1yh3.pdb2.gz) 43 Kb CSU: Contacts of Structural Units for 1YH3 Likely Quarternary Molecular Structure file(s) for 1YH3 Structure Factors (313 Kb) Retrieve 1YH3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YH3 from S2C, [Save to disk] Re-refined 1yh3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 1YH3

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YH3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yh3] [1yh3_B] [1yh3_A] SWISS-PROT database: [P28907] Domain organization of [CD38_HUMAN] by SWISSPFAM

Other resources with information on 1YH3

Community annotation for 1YH3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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