1YIB Structural Protein date Jan 11, 2005
title Crystal Structure Of The Human Eb1 C-Terminal Dimerization D
authors K.C.Slep, S.L.Rogers, S.L.Elliott, H.Ohkura, P.A.Kolodziej, R.D.V
compound source
Molecule: Microtubule-Associated Protein Rpeb Family Membe
Chain: A
Fragment: Eb1 C-Terminal Domain
Synonym: Eb1; Apc-Binding Protein Eb1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapre1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p2
symmetry Space Group: C 2 2 21
R_factor 0.221 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.153 108.332 37.097 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
related structures by homologous chain: 1WU9, 1YIG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural determinants for EB1-mediated recruitment of APC and spectraplakins to the microtubule plus end., Slep KC, Rogers SL, Elliott SL, Ohkura H, Kolodziej PA, Vale RD, J Cell Biol 2005 Feb 14;168(4):587-98. Epub 2005 Feb 7. PMID:15699215
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (1yib.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1YIB
  • Likely Quarternary Molecular Structure file(s) for 1YIB
  • Structure Factors (114 Kb)
  • Retrieve 1YIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YIB from S2C, [Save to disk]
  • Re-refined 1yib structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YIB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YIB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yib_A] [1yib]
  • SWISS-PROT database: [Q15691]
  • Domain organization of [MARE1_HUMAN] by SWISSPFAM
  • Other resources with information on 1YIB
  • Community annotation for 1YIB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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