1YIC Electron Transport date Feb 18, 1997
title The Oxidized Saccharomyces Cerevisiae Iso-1-Cytochrome C, Nm Structures
authors L.Banci, I.Bertini, K.L.Bren, H.B.Gray, P.Sompornpisut, P.Turano
compound source
Molecule: Cytochrome C, Iso-1
Chain: A
Synonym: Ferricytochrome C
Engineered: Yes
Mutation: Yes
Other_details: Oxidized Form
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_gene: Yeast Iso-1-Cytochrome C
methodSolution NMR
ligand HEC, M3L enzyme
related structures by homologous chain: 1J3S, 1NMI
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of oxidized Saccharomyces cerevisiae iso-1-cytochrome c., Banci L, Bertini I, Bren KL, Gray HB, Sompornpisut P, Turano P, Biochemistry 1997 Jul 22;36(29):8992-9001. PMID:9220987
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (599 Kb) [Save to disk]
  • Biological Unit Coordinates (1yic.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1YIC
  • CSU: Contacts of Structural Units for 1YIC
  • Retrieve 1YIC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YIC from S2C, [Save to disk]
    • View 1YIC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YIC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YIC, from MSDmotif at EBI
  • Genome occurence of 1YIC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1yic__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yic] [1yic_A]
  • SWISS-PROT database: [P00044]
  • Domain organization of [CYC1_YEAST] by SWISSPFAM
    • Other resources with information on 1YIC
  • Community annotation for 1YIC at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science