1YJ2	Luminescent Protein	date	Jan 13, 2005
title	Cyclized, Non-Dehydrated Post-Translational Product For S65a H148g Gfp Variant
authors	D.P.Barondeau, C.J.Kassmann, J.A.Tainer, E.D.Getzoff
compound		source
Molecule: Green Fluorescent Protein Chain: A Engineered: Yes Mutation: Yes		Organism_scientific: Aequorea Victoria Organism_taxid: 6100 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 21 21 21	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.999 62.428 71.447 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CRX, EDO, MG	enzyme
related structures	by homologous chain: 1KYR, 1Z1Q
Gene Ontology	Chain Function Process Component A
Primary reference	Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry(,)., Barondeau DP, Kassmann CJ, Tainer JA, Getzoff ED, Biochemistry 2005 Feb 15;44(6):1960-70. PMID:15697221

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (1yj2.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 1YJ2 CSU: Contacts of Structural Units for 1YJ2 Likely Quarternary Molecular Structure file(s) for 1YJ2 Structure Factors (342 Kb) Retrieve 1YJ2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YJ2 from S2C, [Save to disk] Re-refined 1yj2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YJ2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YJ2

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1YJ2 from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YJ2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yj2_A] [1yj2] SWISS-PROT database: [P42212] Domain organization of [GFP_AEQVI] by SWISSPFAM

Other resources with information on 1YJ2

Community annotation for 1YJ2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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