1YLN Structural Genomics, Unknown Function date Jan 19, 2005
title The Crystal Structure Of The Protein Of Unknown Function Vca0042 From Vibrio Cholerae O1
authors R.Zhang, M.Zhou, S.Moy, F.Collart, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Vca0042
Chain: A
Engineered: Yes
 Organism_scientific: Vibrio Cholerae O1
Organism_taxid: 127906
Strain: N16961
Gene: Gi:9657424
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdm68
symmetry Space Group: P 31 2 1
R_factor 0.210 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.429 56.429 171.128 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand OSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1yln.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1YLN
  • CSU: Contacts of Structural Units for 1YLN
  • Likely Quarternary Molecular Structure file(s) for 1YLN
  • Structure Factors (230 Kb)
  • Retrieve 1YLN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YLN from S2C, [Save to disk]
  • Re-refined 1yln structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YLN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YLN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YLN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yln] [1yln_A]
  • SWISS-PROT database: [Q9KNC3]
  • Domain organization of [Q9KNC3_VIBCH] by SWISSPFAM
    • Other resources with information on 1YLN
  • Community annotation for 1YLN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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