1YM4		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	24M BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structure-based design, synthesis, and memapsin 2 (BACE) inhibitory activity of carbocyclic and heterocyclic peptidomimetics., Hanessian S, Yun H, Hou Y, Yang G, Bayrakdarian M, Therrien E, Moitessier N, Roggo S, Veenstra S, Tintelnot-Blomley M, Rondeau JM, Ostermeier C, Strauss A, Ramage P, Paganetti P, Neumann U, Betschart C, J Med Chem. 2005 Aug 11;48(16):5175-90. PMID:16078837

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk] Biological Unit Coordinates (1ym4.pdb1.gz) 67 Kb Biological Unit Coordinates (1ym4.pdb2.gz) 67 Kb Biological Unit Coordinates (1ym4.pdb3.gz) 66 Kb LPC: Ligand-Protein Contacts for 1YM4 CSU: Contacts of Structural Units for 1YM4 Likely Quarternary Molecular Structure file(s) for 1YM4 Structure Factors (661 Kb) Retrieve 1YM4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YM4 from S2C, [Save to disk] Re-refined 1ym4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YM4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ym4] [1ym4_A] [1ym4_B] [1ym4_C] [1ym4_X] [1ym4_Y] [1ym4_Z] SWISS-PROT database: [P56817] Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB.

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