1YM8 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand HYP enzyme
Primary referenceThe crystal structure of the collagen-like polypeptide (glycyl-4(R)-hydroxyprolyl-4(R)-hydroxyprolyl)9 at 1.55 A resolution shows up-puckering of the proline ring in the Xaa position., Schumacher M, Mizuno K, Bachinger HP, J Biol Chem 2005 May 27;280(21):20397-403. Epub 2005 Mar 22. PMID:15784619
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1ym8.pdb1.gz) 15 Kb
  • Biological Unit Coordinates (1ym8.pdb2.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 1YM8
  • CSU: Contacts of Structural Units for 1YM8
  • Likely Quarternary Molecular Structure file(s) for 1YM8
  • Structure Factors (170 Kb)
  • Retrieve 1YM8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YM8 from S2C, [Save to disk]
  • Re-refined 1ym8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YM8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ym8] [1ym8_A] [1ym8_B] [1ym8_D] [1ym8_E] [1ym8_F] [1ym8_G]
  • SWISS-PROT database:

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