1YMC Oxygen Transport date Sep 27, 1993
title Three-Dimensional Structure Of Cyanomet-Sulfmyoglobin C
authors S.V.Evans, G.D.Brayer
compound source
Molecule: Cyanomet-Sulfmyoglobin
Chain: A
Engineered: Yes
Organism_scientific: Equus Caballus
Organism_common: Horse
Organism_taxid: 9796
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.500 28.910 35.660 90.00 107.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CLN, CYN, SO4 enzyme
related structures by homologous chain: 1MBN, 1MLG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structure of cyanomet-sulfmyoglobin C., Evans SV, Sishta BP, Mauk AG, Brayer GD, Proc Natl Acad Sci U S A 1994 May 24;91(11):4723-6. PMID:8197124
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1ymc.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1YMC
  • CSU: Contacts of Structural Units for 1YMC
  • Likely Quarternary Molecular Structure file(s) for 1YMC
  • Structure Factors (87 Kb)
  • Retrieve 1YMC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YMC from S2C, [Save to disk]
  • Re-refined 1ymc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YMC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YMC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YMC, from MSDmotif at EBI
  • Genome occurence of 1YMC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ymc__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ymc] [1ymc_A]
  • SWISS-PROT database: [P68082]
  • Domain organization of [MYG_HORSE] by SWISSPFAM
  • Other resources with information on 1YMC
  • Community annotation for 1YMC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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