1YMD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CL, OCS	enzyme
related structures	by homologous chain: 1YMK, 1YML
Gene Ontology	Chain Function Process Component A
Primary reference	Structural mechanism of oxidative regulation of the phosphatase Cdc25B via an intramolecular disulfide bond., Buhrman G, Parker B, Sohn J, Rudolph J, Mattos C, Biochemistry 2005 Apr 12;44(14):5307-16. PMID:15807524

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (1ymd.pdb1.gz) 33 Kb LPC: Ligand-Protein Contacts for 1YMD CSU: Contacts of Structural Units for 1YMD Likely Quarternary Molecular Structure file(s) for 1YMD Structure Factors (232 Kb) Retrieve 1YMD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YMD from S2C, [Save to disk] Re-refined 1ymd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YMD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ymd] [1ymd_A] SWISS-PROT database: [P30305] Domain found in 1YMD: [RHOD ] by SMART

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