1YMM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component A B C
Primary reference	Unconventional topology of self peptide-major histocompatibility complex binding by a human autoimmune T cell receptor., Hahn M, Nicholson MJ, Pyrdol J, Wucherpfennig KW, Nat Immunol 2005 May;6(5):490-6. Epub 2005 Apr 10. PMID:15821740

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk] Biological Unit Coordinates (1ymm.pdb1.gz) 116 Kb LPC: Ligand-Protein Contacts for 1YMM CSU: Contacts of Structural Units for 1YMM Likely Quarternary Molecular Structure file(s) for 1YMM Structure Factors (260 Kb) Retrieve 1YMM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YMM from S2C, [Save to disk] Re-refined 1ymm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YMM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ymm_E] [1ymm] [1ymm_A] [1ymm_B] [1ymm_C] [1ymm_D] SWISS-PROT database: [P01911] [P01903] [P02686] [P01848] [P01850] Domains found in 1YMM: [IG_like] [IGc1] [IGv] [MHC_II_alpha] [MHC_II_beta ] by SMART

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