1YN1 Rna date Jan 23, 2005
title Solution Structure Of The Vs Ribozyme Stem-Loop V In The Pre Mgcl2
authors D.O.Campbell, P.Legault
compound source
Molecule: Vs Ribozyme Stem-Loop V
Chain: A
Fragment: Sl5
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Is Derived From The Neurospora Satellite Ribozyme
methodSolution NMR
Primary referenceNMR structure of varkud satellite ribozyme stem-loop V in the presence of magnesium ions and localization of metal-binding sites., Campbell DO, Bouchard P, Desjardins G, Legault P, Biochemistry. 2006 Sep 5;45(35):10591-605. PMID:16939211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (1yn1.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1YN1
  • Original NMR restraints for 1YN1 from PDB
  • Retrieve 1YN1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YN1 from S2C, [Save to disk]
    • View 1YN1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YN1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YN1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yn1] [1yn1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1YN1
  • Community annotation for 1YN1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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