1YOX Structural Genomics, Unknown Function date Jan 28, 2005
title Structure Of The Conserved Protein Of Unknown Function Pa369 Pseudomonas Aeruginosa
authors J.R.Walker, X.Xu, J.Gu, A.Joachimiak, A.Edwards, A.Savchenko, Midw Center For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Pa3696
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 208964
Strain: Pao1
Gene: Pa3696
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Lic
symmetry Space Group: P 43 21 2
R_factor 0.225 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.912 124.912 164.777 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • Biological Unit Coordinates (1yox.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (1yox.pdb2.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 1YOX
  • CSU: Contacts of Structural Units for 1YOX
  • Likely Quarternary Molecular Structure file(s) for 1YOX
  • Structure Factors (895 Kb)
  • Retrieve 1YOX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YOX from S2C, [Save to disk]
  • Re-refined 1yox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YOX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YOX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YOX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yox_B] [1yox_F] [1yox_E] [1yox] [1yox_D] [1yox_C] [1yox_A]
  • SWISS-PROT database: [Q9HXU4]
  • Domain organization of [Q9HXU4_PSEAE] by SWISSPFAM
    • Other resources with information on 1YOX
  • Community annotation for 1YOX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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