1YP5 Contractile Protein date Jan 29, 2005
title Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
authors S.Gonfloni, P.Kursula, R.Sacco, G.Cesareni, M.Wilmanns
compound source
Molecule: Myosin-5 Isoform
Chain: A
Fragment: Sh3 Domain
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.190 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.620 34.620 99.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.68 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1yp5.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1YP5
  • Likely Quarternary Molecular Structure file(s) for 1YP5
  • Structure Factors (50 Kb)
  • Retrieve 1YP5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YP5 from S2C, [Save to disk]
  • Re-refined 1yp5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YP5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YP5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YP5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yp5_A] [1yp5]
  • SWISS-PROT database: [Q04439]
  • Domain organization of [MYO5_YEAST] by SWISSPFAM
  • Domain found in 1YP5: [SH3 ] by SMART
    • Other resources with information on 1YP5
  • Community annotation for 1YP5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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