1YPY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceThe 1.51-Angstrom structure of the poxvirus L1 protein, a target of potent neutralizing antibodies., Su HP, Garman SC, Allison TJ, Fogg C, Moss B, Garboczi DN, Proc Natl Acad Sci U S A 2005 Mar 22;102(12):4240-5. Epub 2005 Mar 10. PMID:15761054
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1ypy.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (1ypy.pdb2.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1YPY
  • Likely Quarternary Molecular Structure file(s) for 1YPY
  • Structure Factors (1558 Kb)
  • Retrieve 1YPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YPY from S2C, [Save to disk]
  • Re-refined 1ypy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ypy] [1ypy_A] [1ypy_B]
  • SWISS-PROT database: [P07612]
  • Belongs to the poxvirus cell entry protein complex (pep-c) family according to TCDB.

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