1YPZ	Immune System	date	Jan 31, 2005
title	Immune Receptor
authors	E.J.Adams, K.C.Garcia
compound		source
Molecule: H2-T22 Protein Chain: A, C Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
Molecule: Beta-2-Microglobulin Chain: B, D Synonym: Hdcma22p Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
Molecule: T Cell Receptor Delta Chain: E, G Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
Molecule: T-Cell Receptor Gamma Chain Chain: F, H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.264 R_Free 0.330
crystal cell	length a length b length c angle alpha angle beta angle gamma 110.530 113.050 167.970 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.40 Å
ligand	FUC, MAN, NAG	enzyme
Gene Ontology	Chain Function Process Component D, B cellular response to iron io...
Primary reference	Structure of a gammadelta T cell receptor in complex with the nonclassical MHC T22., Adams EJ, Chien YH, Garcia KC, Science. 2005 Apr 8;308(5719):227-31. PMID:15821084

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk] Biological Unit Coordinates (1ypz.pdb1.gz) 263 Kb LPC: Ligand-Protein Contacts for 1YPZ CSU: Contacts of Structural Units for 1YPZ Likely Quarternary Molecular Structure file(s) for 1YPZ Retrieve 1YPZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YPZ from S2C, [Save to disk]

View 1YPZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YPZ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YPZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ypz_H] [1ypz_E] [1ypz_B] [1ypz_A] [1ypz_D] [1ypz_G] [1ypz_F] [1ypz] [1ypz_C] SWISS-PROT database: [P61769] [Q9BCZ1] [P06334] Domain organization of [B2MG_HUMAN] [Q9BCZ1_MOUSE] [TCC3_MOUSE] by SWISSPFAM Domains found in 1YPZ: [IG] [IG_like] [IGc1] [IGv ] by SMART

Other resources with information on 1YPZ

Community annotation for 1YPZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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