1YRS Cell Cycle date Feb 04, 2005
title Crystal Structure Of Ksp In Complex With Inhibitor 1
authors C.D.Cox, M.J.Breslin, B.J.Mariano, P.J.Coleman, C.A.Buser, E.S.Wa K.Hamilton, N.E.Kohl, M.Torrent, Y.Yan, L.C.Kuo, G.D.Hartman
compound source
Molecule: Kinesin-Like Protein Kif11
Chain: A, B
Fragment: Sequence Database Residues 1-368
Synonym: Kinesin-Related Motor Protein Eg5, Kinesin-Like Sp Protein Hksp, Thyroid Receptor Interacting Protein 5, Trip5 Like Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kif11, Eg5, Knsl1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.250 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.300 79.800 159.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ADP, L47, MG BindingDB enzyme
related structures by homologous chain: 1II6
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceKinesin spindle protein (KSP) inhibitors. Part 1: the discovery of 3,5-diaryl-4,5-dihydropyrazoles as potent and selective inhibitors of the mitotic kinesin KSP., Cox CD, Breslin MJ, Mariano BJ, Coleman PJ, Buser CA, Walsh ES, Hamilton K, Huber HE, Kohl NE, Torrent M, Yan Y, Kuo LC, Hartman GD, Bioorg Med Chem Lett 2005 Apr 15;15(8):2041-5. PMID:15808464
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (1yrs.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (1yrs.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 1YRS
  • CSU: Contacts of Structural Units for 1YRS
  • Likely Quarternary Molecular Structure file(s) for 1YRS
  • Retrieve 1YRS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YRS from S2C, [Save to disk]
  • View 1YRS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YRS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YRS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yrs] [1yrs_A] [1yrs_B]
  • SWISS-PROT database: [P52732]
  • Domain organization of [KIF11_HUMAN] by SWISSPFAM
  • Domain found in 1YRS: [KISc ] by SMART
  • Other resources with information on 1YRS
  • Community annotation for 1YRS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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