1YSH Structural Protein Rna date Feb 08, 2005
title Localization And Dynamic Behavior Of Ribosomal Protein L30e
authors M.Halic, T.Becker, J.Frank, C.M.Spahn, R.Beckmann
compound source
Molecule: Rna (28-Mer)
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Rna (34-Mer)
Chain: F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Rna (101-Mer)
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Ribosomal Protein L30
Chain: C
Organism_scientific: Triticum Aestivum
Organism_common: Bread Wheat
Organism_taxid: 4565

Molecule: Ribosomal Protein L37a
Chain: D
Organism_scientific: Oryza Sativa
Organism_common: Rice
Organism_taxid: 4530

Molecule: 40s Ribosomal Protein S13
Chain: E
Organism_scientific: Oryza Sativa
Organism_common: Rice
Organism_taxid: 4530
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method Electron Microscopyresolution 9.50 Å
Gene
Ontology
ChainFunctionProcessComponent
C


D


E


Primary referenceLocalization and dynamic behavior of ribosomal protein L30e., Halic M, Becker T, Frank J, Spahn CM, Beckmann R, Nat Struct Mol Biol 2005 May;12(5):467-8. Epub 2005 May 1. PMID:15864315
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (1ysh.pdb1.gz) 100 Kb
  • CSU: Contacts of Structural Units for 1YSH
  • Likely Quarternary Molecular Structure file(s) for 1YSH
  • Retrieve 1YSH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YSH from S2C, [Save to disk]
    • View 1YSH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YSH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YSH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ysh_F] [1ysh_A] [1ysh_B] [1ysh_D] [1ysh_E] [1ysh_C] [1ysh]
  • SWISS-PROT database: [Q5I7K9] [Q5QM99] [Q69UI1]
  • Domain organization of [RL30_WHEAT] [RL37A_ORYSJ] [RS132_ORYSJ] by SWISSPFAM
  • Domain found in 1YSH: [Ribosomal_S15 ] by SMART
    • Other resources with information on 1YSH
  • Community annotation for 1YSH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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