1YSK Hydrolase date Feb 08, 2005
title Modeled Structure Of Human Pancreatic Phospholipase A2 Bound To A Phospholipid Membrane
authors S.A.Tatulian
compound source
Molecule: Phospholipase A2
Chain: A
Synonym: Phosphatidylcholine 2- Acylhydrolase, Group Ib Phospholipase A2;
Ec: 3.1.1.4
Engineered: Yes
Other_details: The Angular Orientation Of The Protein At The Membrane Surface Was Determined Using A Semisynthetic Phospholipase A2 Molecule, In Which The Residues 1-10 Were Synthetic, And The Residues 11-126 Were Expressed In Escherichia Coli And Uniformly 13c-Labeled.
 Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Pla2g1b, Pla2, Pla2a
Expression_system: Escherichia Coli
Expression_system_common: Bacteria
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21a-Ibpla2
methodTheoretical Model
ligand
enzyme Hydrolase E.C.3.1.1.4 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1YSK
    • View 1YSK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YSK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1ysk from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • SWISS-PROT database: [P04054]
  • Domain organization of [PA21B_HUMAN] by SWISSPFAM
    • Other resources with information on 1YSK
  • Community annotation for 1YSK at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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