1YSV Rna date Feb 09, 2005
title Solution Structure Of The Central Region Of The Human Glur-B Mrna
authors R.Stefl, F.H.Allain
compound source
Molecule: 27-Mer
Chain: A
Engineered: Yes
Other_details: Glur-B Rg Pre-Mrna
 Synthetic: Yes
Other_details: In Vitro Transcribed Using T7 Polymerase. Th Sequence Of The Rna Can Be Found Naturally In Homo Sapiens
methodSolution NMR
Primary referenceA novel RNA pentaloop fold involved in targeting ADAR2., Stefl R, Allain FH, RNA 2005 May;11(5):592-7. PMID:15840813
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (1ysv.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 1YSV
  • Original NMR restraints for 1YSV from PDB
  • Retrieve 1YSV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YSV from S2C, [Save to disk]
    • View 1YSV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YSV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YSV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ysv_A] [1ysv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1YSV
  • Community annotation for 1YSV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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