1YTR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
note 1YTR is a representative structure
Primary referenceStructure and mode of action of the membrane-permeabilizing antimicrobial peptide pheromone plantaricin A., Kristiansen PE, Fimland G, Mantzilas D, Nissen-Meyer J, J Biol Chem 2005 Jun 17;280(24):22945-50. Epub 2005 Apr 1. PMID:15805109
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (1ytr.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 1YTR
  • Original NMR restraints for 1YTR from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1YTR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YTR from S2C, [Save to disk]
    • View 1YTR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ytr_A] [1ytr]
  • SWISS-PROT database: [P80214]
  • Belongs to the lactococcin a (lactococcin a) family according to TCDB.

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