1YTS Hydrolase date Apr 07, 1995
title A Ligand-Induced Conformational Change In The Yersinia Prote Tyrosine Phosphatase
authors H.L.Schubert, J.A.Stuckey, E.B.Fauman, J.E.Dixon, M.A.Saper
compound source
Molecule: Yersinia Protein Tyrosine Phosphatase
Chain: A
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Yersinia Enterocolitica
Organism_taxid: 630
Strain: W22703
Gene: Yop51
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7
Expression_system_gene: Yop51
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.400 49.800 100.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand SO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
related structures by homologous chain: 1XXV, 1YPT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA ligand-induced conformational change in the Yersinia protein tyrosine phosphatase., Schubert HL, Fauman EB, Stuckey JA, Dixon JE, Saper MA, Protein Sci 1995 Sep;4(9):1904-13. PMID:8528087
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1yts.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1YTS
  • CSU: Contacts of Structural Units for 1YTS
  • Likely Quarternary Molecular Structure file(s) for 1YTS
  • Retrieve 1YTS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YTS from S2C, [Save to disk]
  • View 1YTS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YTS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YTS, from MSDmotif at EBI
  • Genome occurence of 1YTS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1yts__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yts_A] [1yts]
  • SWISS-PROT database: [P15273]
  • Domain organization of [YOPH_YEREN] by SWISSPFAM
  • Domain found in 1YTS: [PTPc ] by SMART
  • Other resources with information on 1YTS
  • Community annotation for 1YTS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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