1YUI Dna Binding Protein Dna date Dec 31, 1996
title Solution Nmr Structure Of The Gaga Factordna Complex, Regularized Mean Structure
authors G.M.Clore, J.G.Omichinski, A.M.Gronenborn
compound source
Molecule: Dna (5'-D(Gpcpcpgpapgpapgptpapc)-3')
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'-D(Gptpapcptpcptpcpgpgpc)-3')
Chain: C
Engineered: Yes

Synthetic: Yes

Molecule: Gaga-Factor
Chain: A
Fragment: Dna Binding Domain, Residues 310 - 372

Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1YUJ
Primary referenceThe solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode., Omichinski JG, Pedone PV, Felsenfeld G, Gronenborn AM, Clore GM, Nat Struct Biol 1997 Feb;4(2):122-32. PMID:9033593
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1YUI
  • CSU: Contacts of Structural Units for 1YUI
  • Original NMR restraints for 1YUI from PDB
  • Retrieve 1YUI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YUI from S2C, [Save to disk]
  • View 1YUI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YUI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YUI, from MSDmotif at EBI
  • Genome occurence of 1YUI's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1yuia_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1yui from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yui] [1yui_B] [1yui_C] [1yui_A]
  • SWISS-PROT database: [Q08605]
  • Domain organization of [GAGA_DROME] by SWISSPFAM
  • Domain found in 1YUI: [ZnF_C2H2 ] by SMART
  • Other resources with information on 1YUI
  • Community annotation for 1YUI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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