1YVK Transferase date Feb 15, 2005
title Crystal Structure Of The Bacillis Subtilis Acetyltransferase Complex With Coa, Northeast Structural Genomics Target Sr23
authors F.Forouhar, W.Yong, R.Xiao, M.Ciano, T.B.Acton, G.T.Montelione, J. L.Tong, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Hypothetical Protein Bsu33890
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Bacillus Subtilis Subsp. Subtilis Str.
Organism_taxid: 224308
Strain: Subsp. Subtilis Str. 168
Gene: Yvbk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Pet21
Expression_system_plasmid: Bl21
symmetry Space Group: C 2 2 21
R_factor 0.243 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.596 124.425 216.942 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.01 Å
ligand COA, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (1yvk.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 1YVK
  • CSU: Contacts of Structural Units for 1YVK
  • Likely Quarternary Molecular Structure file(s) for 1YVK
  • Structure Factors (378 Kb)
  • Retrieve 1YVK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YVK from S2C, [Save to disk]
  • Re-refined 1yvk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YVK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YVK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YVK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yvk_A] [1yvk_D] [1yvk] [1yvk_C] [1yvk_B]
  • SWISS-PROT database: [O32248]
  • Domain organization of [YVBK_BACSU] by SWISSPFAM
    • Other resources with information on 1YVK
  • Community annotation for 1YVK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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