1YWI Structural Protein date Feb 18, 2005
title Structure Of The Fbp11ww1 Domain Complexed To The Peptide Ap
authors J.R.Pires, C.Parthier, R.Aido-Machado, U.Wiedemann, L.Otte, G.Boe R.Rudolph, H.Oschkinat
compound source
Molecule: Formin-Binding Protein 3
Chain: A
Fragment: Ww1 Domain
Synonym: Formin Binding Protein 11
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2tk

Molecule: Formin
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Automated Solid Phase Synthesis On Chlortrit Using Fmoc Strategy
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for APPTPPPLPP peptide recognition by the FBP11WW1 domain., Pires JR, Parthier C, Aido-Machado R, Wiedemann U, Otte L, Bohm G, Rudolph R, Oschkinat H, J Mol Biol. 2005 Apr 29;348(2):399-408. PMID:15811376
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (1ywi.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 1YWI
  • Original NMR restraints for 1YWI from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1YWI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YWI from S2C, [Save to disk]
    • View 1YWI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YWI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YWI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ywi_A] [1ywi] [1ywi_B]
  • SWISS-PROT database: [O75400]
  • Domain organization of [PR40A_HUMAN] by SWISSPFAM
  • Domain found in 1YWI: [WW ] by SMART
    • Other resources with information on 1YWI
  • Community annotation for 1YWI at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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