1YWO Hydrolase, Signaling Protein date Feb 18, 2005
title Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
authors L.Deng, C.A.Velikovsky, C.P.Swaminathan, S.Cho, R.A.Mariuzza
compound source
Molecule: 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodi Gamma 1;
Chain: A
Synonym: Phosphoinositide Phospholipase C, Plc-Gamma-1, Pho C-Gamma-1, Plc-II, Plc-148;
Ec: 3.1.4.11
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Plcg1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1

Molecule: Lymphocyte Cytosolic Protein 2
Chain: P
Synonym: Sh2 Domain-Containing Leucocyte Protein Of 76 Kda, Tyrosine Phosphoprotein, Slp76

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 43 21 2
R_factor 0.171 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.723 46.723 58.112 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.81 Å
ligand
enzyme Hydrolase E.C.3.1.4.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for Recognition of the T Cell Adaptor Protein SLP-76 by the SH3 Domain of Phospholipase Cgamma1., Deng L, Velikovsky CA, Swaminathan CP, Cho S, Mariuzza RA, J Mol Biol 2005 Jul 29;. PMID:16061254
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1ywo.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1YWO
  • Likely Quarternary Molecular Structure file(s) for 1YWO
  • Structure Factors (61 Kb)
  • Retrieve 1YWO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YWO from S2C, [Save to disk]
  • Re-refined 1ywo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YWO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YWO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YWO, from MSDmotif at EBI
  • Fold representative 1ywo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ywo_A] [1ywo] [1ywo_P]
  • SWISS-PROT database: [Q13094] [P10686]
  • Domain organization of [LCP2_HUMAN] [PLCG1_RAT] by SWISSPFAM
  • Domain found in 1YWO: [SH3 ] by SMART
  • Other resources with information on 1YWO
  • Community annotation for 1YWO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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