1YXB Hydrolase date Feb 20, 2005
title Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase From Streptomyces Coelicolor. Nesg Target Rr8.
authors J.Benach, A.P.Kuzin, F.Forouhar, M.Abashidze, S.M.Vorobiev, X.Rong, T.B.Acton, G.T.Montelione, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Phosphoribosyl-Atp Pyrophosphatase
Chain: A, B, C, D, E, F, G, H
Synonym: Pra-Ph
Ec: 3.6.1.31
Engineered: Yes
Organism_scientific: Streptomyces Coelicolor
Organism_taxid: 1902
Gene: Hise
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.250 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.904 62.361 76.620 79.21 82.13 75.42
method X-Ray Diffractionresolution 2.60 Å
ligand MSE enzyme Hydrolase E.C.3.6.1.31 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (1yxb.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (1yxb.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 1YXB
  • CSU: Contacts of Structural Units for 1YXB
  • Likely Quarternary Molecular Structure file(s) for 1YXB
  • Structure Factors (123 Kb)
  • Retrieve 1YXB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YXB from S2C, [Save to disk]
  • Re-refined 1yxb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YXB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YXB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YXB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yxb_C] [1yxb_F] [1yxb_D] [1yxb_H] [1yxb_A] [1yxb_G] [1yxb_B] [1yxb_E] [1yxb]
  • SWISS-PROT database: [Q9EWK0]
  • Domain organization of [HIS2_STRCO] by SWISSPFAM
  • Other resources with information on 1YXB
  • Community annotation for 1YXB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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