1YY8 Crystal structure of the Fab fragment from the monoclonal antibody cetuximab/Erbitux/IMC-C225 date
authors Li, S., Schmitz, K.R., Jeffrey, P.D., Wiltzius, J.J.W., Kussie, P., Ferguson, K.M.
compound source
symmetry
R_factor
R_Free 0.2639
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
related structures by homologous chain: 1D6V, 1K4C, 2F5B
Primary referenceStructural basis for inhibition of the epidermal growth factor receptor by cetuximab., Li S, Schmitz KR, Jeffrey PD, Wiltzius JJ, Kussie P, Ferguson KM, Cancer Cell 2005 Apr;7(4):301-11. PMID:15837620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (1yy8.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (1yy8.pdb2.gz) 73 Kb
  • CSU: Contacts of Structural Units for 1YY8
  • Likely Quarternary Molecular Structure file(s) for 1YY8
  • Structure Factors (461 Kb)
  • Retrieve 1YY8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YY8 from S2C, [Save to disk]
  • Re-refined 1yy8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YY8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YY8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YY8, from MSDmotif at EBI
  • Fold representative 1yy8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yy8] [1yy8_C] [1yy8_B] [1yy8_D] [1yy8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1YY8: [IG_like] [IGv ] by SMART
  • Other resources with information on 1YY8
  • Community annotation for 1YY8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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