1YYH Cell Cycle,Transcription date Feb 25, 2005
title Crystal Structure Of The Human Notch 1 Ankyrin Domain
authors M.T.Ehebauer, D.Y.Chirgadze, P.Hayward, A.Martinez-Arias, T.L.Blundell
compound source
Molecule: Notch 1, Ankyrin Domain
Chain: A, B
Fragment: Ankyrin Domain
Synonym: Neurogenic Locus Notch Homolog Protein 1; Hn1 Translocation-Associated Notch Protein Tan-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch1, Tan1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet41
symmetry Space Group: P 65
R_factor 0.161 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.840 96.840 108.996 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
Primary referenceHigh-resolution crystal structure of the human Notch 1 ankyrin domain., Ehebauer MT, Chirgadze DY, Hayward P, Martinez Arias A, Blundell TL, Biochem J 2005 Jul 12;. PMID:16011479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1yyh.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (1yyh.pdb2.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1YYH
  • Likely Quarternary Molecular Structure file(s) for 1YYH
  • Structure Factors (342 Kb)
  • Retrieve 1YYH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YYH from S2C, [Save to disk]
  • Re-refined 1yyh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YYH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YYH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YYH, from MSDmotif at EBI
  • Fold representative 1yyh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yyh_A] [1yyh_B] [1yyh]
  • SWISS-PROT database: [P46531]
  • Domain organization of [NOTC1_HUMAN] by SWISSPFAM
  • Domain found in 1YYH: [ANK ] by SMART
  • Alignments of the sequence of 1YYH with the sequences similar proteins can be viewed for 1YYH's classification [NOTC1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NOTC1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1YYH
  • Community annotation for 1YYH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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