1YZB Transcription date Feb 28, 2005
title Solution Structure Of The Josephin Domain Of Ataxin-3
authors G.Nicastro, L.Masino, R.P.Menon, P.P.Knowles, N.Q.Mcdonald, A.Pastore
compound source
Molecule: Machado-Joseph Disease Protein 1
Chain: A
Fragment: N-Terminal Domain Of Ataxin-3
Synonym: Ataxin-3, Spinocerebellar Ataxia Type 3 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
methodSolution NMR

Primary referenceThe solution structure of the Josephin domain of ataxin-3: Structural determinants for molecular recognition., Nicastro G, Menon RP, Masino L, Knowles PP, McDonald NQ, Pastore A, Proc Natl Acad Sci U S A 2005 Jul 26;102(30):10493-8. Epub 2005 Jul 14. PMID:16020535
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (488 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1YZB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1YZB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YZB from S2C, [Save to disk]
  • View 1YZB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YZB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1YZB, from MSDmotif at EBI
  • Fold representative 1yzb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yzb_A] [1yzb]
  • SWISS-PROT database: [P54252]
  • Domain organization of [ATX3_HUMAN] by SWISSPFAM
  • Domain found in 1YZB: [Josephin ] by SMART
  • Other resources with information on 1YZB
  • Community annotation for 1YZB at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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