1Z1L Hydrolase date Mar 04, 2005
title The Crystal Structure Of The Phosphodiesterase 2a Catalytic
authors Y.H.Ding, D.Kohls, C.Low
compound source
Molecule: Cgmp-Dependent 3',5'-Cyclic Phosphodiesterase
Chain: A
Fragment: Catalytic Domain, Residues 578-919
Synonym: Cyclic Gmp Stimulated Phosphodiesterase, Cgs-Pde,
Ec: 3.1.4.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pde2a
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 2 2 21
R_factor 0.207 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.033 102.549 81.598 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand MG, PO4, ZN enzyme Hydrolase E.C.3.1.4.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Determinants for Inhibitor Specificity and Selectivity in PDE2A Using the Wheat Germ in Vitro Translation System., Iffland A, Kohls D, Low S, Luan J, Zhang Y, Kothe M, Cao Q, Kamath AV, Ding YH, Ellenberger T, Biochemistry 2005 Jun 14;44(23):8312-25. PMID:15938621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1z1l.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1Z1L
  • CSU: Contacts of Structural Units for 1Z1L
  • Likely Quarternary Molecular Structure file(s) for 1Z1L
  • Structure Factors (309 Kb)
  • Retrieve 1Z1L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z1L from S2C, [Save to disk]
  • Re-refined 1z1l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z1L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z1L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z1L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z1l] [1z1l_A]
  • SWISS-PROT database: [O00408]
  • Domain organization of [PDE2A_HUMAN] by SWISSPFAM
  • Domain found in 1Z1L: [HDc ] by SMART
  • Other resources with information on 1Z1L
  • Community annotation for 1Z1L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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