1Z1M Ligase date Mar 04, 2005
title Nmr Structure Of Unliganded Mdm2
authors S.Uhrinova, D.Uhrin, H.Powers, K.Watt, D.Zheleva, P.Fischer, C.Mcinnes, P.N.Barlow
compound source
Molecule: Ubiquitin-Protein Ligase E3 Mdm2
Chain: A
Fragment: N-Terminal Domain
Synonym: P53-Binding Protein Mdm2, Oncoprotein Mdm2, Double Minute 2 Protein, Hdm2;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3) Plyss
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Free MDM2 N-terminal Domain Reveals Conformational Adjustments that Accompany p53-binding., Uhrinova S, Uhrin D, Powers H, Watt K, Zheleva D, Fischer P, McInnes C, Barlow PN, J Mol Biol 2005 Jul 15;350(3):587-98. PMID:15953616
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (775 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1Z1M
  • Original NMR restraints for 1Z1M from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1Z1M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z1M from S2C, [Save to disk]
  • View 1Z1M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z1M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Z1M, from MSDmotif at EBI
  • Fold representative 1z1m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z1m_A] [1z1m]
  • SWISS-PROT database: [Q00987]
  • Domain organization of [MDM2_HUMAN] by SWISSPFAM
  • Other resources with information on 1Z1M
  • Community annotation for 1Z1M at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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