1Z5Q Ligase Protein Binding date Mar 18, 2005
title Nmr Based Structural Model Of The Sumo-3ubc9 Complex
authors H.Ding, Y.Yang, J.Zhang, J.Wu, H.Liu, Y.Shi
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2 I
Chain: A
Synonym: Ubiquitin-Protein Ligase I, Ubiquitin Carrier Protein I, Sumo-1-Protein Ligase, Sumo-1 Conjugating Enzyme, Ubiquitin Carrier Protein 9, P18, Ubc9;
Ec: 6.3.2.19
Organism_scientific: Homo Sapiens
Organism_common: Human

Molecule: Ubiquitin-Like Protein Smt3b
Chain: B
Fragment: Ubiqutin-Like Domain
Synonym: Sentrin 2, Hsmt3, Sumo-3
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
methodTheoretical Model
ligand
enzyme Ligase E.C.6.3.2.19 BRENDA
Primary referenceStructural basis for SUMO-E2 interaction revealed by a complex model using docking approach in combination with NMR data., Ding H, Yang Y, Zhang J, Wu J, Liu H, Shi Y, Proteins. 2005 Dec 1;61(4):1050-8. PMID:16224784
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1Z5Q
  • View 1Z5Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z5Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1z5q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [P61956] [P63279]
  • Belongs to the peroxisomal protein importer (ppi) family according to TCDB.
  • Domain organization of [SUMO2_HUMAN] [UBC9_HUMAN] by SWISSPFAM
  • Other resources with information on 1Z5Q
  • Community annotation for 1Z5Q at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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