1Z6E	Hydrolase	date	Mar 22, 2005
title	Factor Xa In Complex With The Inhibitor 1-(3'-Amino-1,2-Benz 5'-Yl)-N-(4-(2'-((Dimethylamino)Methyl)-1h-Imidazol-1-Yl)-2 Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Razaxaban; Dpc906; Bms-561389)
authors	R.S.Alexander
compound		source
Molecule: Coagulation Factor X Chain: A Fragment: Unp Residues 235-468 Synonym: Stuart Factor, Stuart-Prower Factor Ec: 3.4.21.6		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood
Molecule: Coagulation Factor X Chain: L Fragment: Unp Residues 127-178 Synonym: Stuart Factor, Stuart-Prower Factor		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood
symmetry	Space Group: P 21 21 21	R_factor 0.219 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.100 71.700 78.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	IK8 BindingDB	enzyme	Hydrolase E.C.3.4.21.6 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of 1-(3'-aminobenzisoxazol-5'-yl)-3-trifluoromethyl-N-[2-fluoro-4- [(2'-dimethylaminomethyl)imidazol-1-yl]phenyl]-1H-pyrazole-5-carboxyamide hydrochloride (razaxaban), a highly potent, selective, and orally bioavailable factor Xa inhibitor., Quan ML, Lam PY, Han Q, Pinto DJ, He MY, Li R, Ellis CD, Clark CG, Teleha CA, Sun JH, Alexander RS, Bai S, Luettgen JM, Knabb RM, Wong PC, Wexler RR, J Med Chem. 2005 Mar 24;48(6):1729-44. PMID:15771420

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (1z6e.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 1Z6E CSU: Contacts of Structural Units for 1Z6E Likely Quarternary Molecular Structure file(s) for 1Z6E Structure Factors (380 Kb) Retrieve 1Z6E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Z6E from S2C, [Save to disk] Re-refined 1z6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Z6E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Z6E

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Z6E, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1z6e_L] [1z6e] [1z6e_B] [1z6e_A] SWISS-PROT database: [P00742] Domain organization of [FA10_HUMAN] by SWISSPFAM Domains found in 1Z6E: [EGF] [Tryp_SPc ] by SMART

Other resources with information on 1Z6E

Community annotation for 1Z6E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---