1Z8D Transferase date Mar 30, 2005
title Crystal Structure Of Human Muscle Glycogen Phosphorylase A W And Glucose
authors C.M.Lukacs, N.G.Oikonomakos, R.L.Crowther, L.N.Hong, R.U.Kammlot W.Levin, S.Li, C.M.Liu, D.Lucas-Mcgady, S.Pietranico, L.Reik
compound source
Molecule: Glycogen Phosphorylase, Muscle Form
Chain: A
Synonym: Myophosphorylase
Ec: 2.4.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pygm
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Virus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 2
R_factor 0.192 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.370 144.000 59.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ADE, AMP, GLC, LLP, SEP BindingDB enzyme Transferase E.C.2.4.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of human muscle glycogen phosphorylase a with bound glucose and AMP: An intermediate conformation with T-state and R-state features., Lukacs CM, Oikonomakos NG, Crowther RL, Hong LN, Kammlott RU, Levin W, Li S, Liu CM, Lucas-McGady D, Pietranico S, Reik L, Proteins. 2006 Mar 7;. PMID:16523484
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (1z8d.pdb1.gz) 277 Kb
  • LPC: Ligand-Protein Contacts for 1Z8D
  • CSU: Contacts of Structural Units for 1Z8D
  • Likely Quarternary Molecular Structure file(s) for 1Z8D
  • Structure Factors (285 Kb)
  • Retrieve 1Z8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z8D from S2C, [Save to disk]
  • Re-refined 1z8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z8D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z8D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z8d] [1z8d_A]
  • SWISS-PROT database: [P11217]
  • Domain organization of [PYGM_HUMAN] by SWISSPFAM
  • Other resources with information on 1Z8D
  • Community annotation for 1Z8D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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