1Z8J	Hydrolase Hydrolase Inhibitor	date	Mar 30, 2005
title	Crystal Structure Of The Thrombin Mutant G193p Bound To Ppac
authors	K.M.Bobofchak, A.O.Pineda, F.S.Mathews, E.Di Cera
compound		source
Molecule: Thrombin Light Chain Chain: A Fragment: Sequence Database Residues 322-361 Synonym: Coagulation Factor II Ec: 3.4.21.5 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F2 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_strain: Plasmid Expression_system_organ: Kidney Expression_system_vector_type: Vector Expression_system_vector: Hpc4-Pnut
Molecule: Thrombin Heavy Chain Chain: B Fragment: Sequence Database Residues 364-622 Synonym: Coagulation Factor II Ec: 3.4.21.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F2 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029
symmetry	Space Group: P 21 21 21	R_factor 0.205 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.710 73.550 90.100 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	0G6, NA, NAG, ZN	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
related structures	by homologous chain: 1A2C, 1AD8, 1QUR, 1Z8I
Gene Ontology	Chain Function Process Component A B
Primary reference	Energetic and structural consequences of perturbing Gly-193 in the oxyanion hole of serine proteases., Bobofchak KM, Pineda AO, Mathews FS, Di Cera E, J Biol Chem 2005 Jul 8;280(27):25644-50. Epub 2005 May 12. PMID:15890651

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (1z8j.pdb1.gz) 53 Kb Biological Unit Coordinates (1z8j.pdb2.gz) 53 Kb LPC: Ligand-Protein Contacts for 1Z8J CSU: Contacts of Structural Units for 1Z8J Likely Quarternary Molecular Structure file(s) for 1Z8J Structure Factors (368 Kb) Retrieve 1Z8J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Z8J from S2C, [Save to disk] Re-refined 1z8j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Z8J in 3D

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Visual 3D analysis of 1Z8J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Z8J, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1z8j_A] [1z8j] [1z8j_B] [1z8j_I] SWISS-PROT database: [P00734] Domain organization of [THRB_HUMAN] by SWISSPFAM Domain found in 1Z8J: [Tryp_SPc ] by SMART

Other resources with information on 1Z8J

Community annotation for 1Z8J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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