1Z8L Hydrolase date Mar 30, 2005
title Crystal Structure Of Prostate-Specific Membrane Antigen, A T Marker And Peptidase
authors M.I.Davis, M.J.Bennett, L.M.Thomas, P.J.Bjorkman
compound source
Molecule: Glutamate Carboxypeptidase II
Chain: A, B, C, D
Fragment: Cytoplasmic Domain (Residues 56-750)
Synonym: Membrane Glutamate Carboxypeptidase, Mgcp, N-Acety Alpha-Linked Acidic Dipeptidase I, Naaladase I, Pteroylpoly Glutamate Carboxypeptidase, Folylpoly-Gamma-Glutamate Carboxypeptidase, Fgcp, Folate Hydrolase 1, Prostate-Specif Membrane Antigen, Psma, Psm;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Folh1, Folh, Naalad1, Psm, Psma
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.252 R_Free 0.284
length a length b length c angle alpha angle beta angle gamma
74.865 157.765 133.839 90.00 93.24 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand NAG, NDG, ZN enzyme Hydrolase E.C. BRENDA
A, D, C, B

Primary referenceCrystal structure of prostate-specific membrane antigen, a tumor marker and peptidase., Davis MI, Bennett MJ, Thomas LM, Bjorkman PJ, Proc Natl Acad Sci U S A 2005 Apr 26;102(17):5981-6. Epub 2005 Apr 18. PMID:15837926
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (430 Kb) [Save to disk]
  • Biological Unit Coordinates (1z8l.pdb1.gz) 211 Kb
  • Biological Unit Coordinates (1z8l.pdb2.gz) 213 Kb
  • LPC: Ligand-Protein Contacts for 1Z8L
  • CSU: Contacts of Structural Units for 1Z8L
  • Likely Quarternary Molecular Structure file(s) for 1Z8L
  • Structure Factors (639 Kb)
  • Retrieve 1Z8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z8L from S2C, [Save to disk]
  • Re-refined 1z8l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z8L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Z8L, from MSDmotif at EBI
  • Fold representative 1z8l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z8l] [1z8l_C] [1z8l_A] [1z8l_B] [1z8l_D]
  • SWISS-PROT database: [Q04609]
  • Domain organization of [FOLH1_HUMAN] by SWISSPFAM
  • Other resources with information on 1Z8L
  • Community annotation for 1Z8L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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