1Z9Q Oxidoreductase Activator date Apr 04, 2005
title Solution Structure Of Sh3 Domain Of P40phox
authors S.Adachi, K.Ogura, Y.Fujioka, F.Inagaki
compound source
Molecule: Neutrophil Cytosol Factor 4
Chain: A
Fragment: Sh3 Domain
Synonym: P40phox, Ncf-4, Neutrophil Nadph Oxidase Factor 4, P40-Phox;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcold2
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (413 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1Z9Q
  • Original NMR restraints for 1Z9Q from PDB
  • Retrieve 1Z9Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z9Q from S2C, [Save to disk]
  • View 1Z9Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z9Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Z9Q, from MSDmotif at EBI
  • Fold representative 1z9q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z9q_A] [1z9q]
  • SWISS-PROT database: [Q15080]
  • Domain organization of [NCF4_HUMAN] by SWISSPFAM
  • Domain found in 1Z9Q: [SH3 ] by SMART
  • Alignments of the sequence of 1Z9Q with the sequences similar proteins can be viewed for 1Z9Q's classification [NCF4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NCF4_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1Z9Q
  • Community annotation for 1Z9Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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