1Z9X Transferase date Apr 05, 2005
title Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form Wit Monomers In The Asymmetric Unit
authors P.Kursula, F.Lehmann, G.Shani, A.Kimchi, M.Wilmanns
compound source
Molecule: Death-Associated Protein Kinase 2
Chain: A, B, C
Fragment: Residues 1-320
Synonym: Dap Kinase 2, Dap- Kinase Related Protein 1, Drp-1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dapk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest-15
symmetry Space Group: C 1 2 1
R_factor 0.328 R_Free 0.351
length a length b length c angle alpha angle beta angle gamma
126.400 62.990 150.970 90.00 110.98 90.00
method X-Ray Diffractionresolution 3.93 Å
enzyme Transferase E.C. BRENDA
A, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (1z9x.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (1z9x.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (1z9x.pdb3.gz) 47 Kb
  • CSU: Contacts of Structural Units for 1Z9X
  • Likely Quarternary Molecular Structure file(s) for 1Z9X
  • Structure Factors (78 Kb)
  • Retrieve 1Z9X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z9X from S2C, [Save to disk]
  • Re-refined 1z9x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z9X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z9X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Z9X, from MSDmotif at EBI
  • Fold representative 1z9x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z9x] [1z9x_A] [1z9x_C] [1z9x_B]
  • SWISS-PROT database: [Q9UIK4]
  • Domain organization of [DAPK2_HUMAN] by SWISSPFAM
  • Domain found in 1Z9X: [S_TKc ] by SMART
  • Other resources with information on 1Z9X
  • Community annotation for 1Z9X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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