1ZA5 Oxidoreductase date Apr 05, 2005
title Q69h-Fesod
authors E.Yikilmaz, D.W.Rodgers, A.F.Miller
compound source
Molecule: Superoxide Dismutase [Fe]
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Sodb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Qc774
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.237
length a length b length c angle alpha angle beta angle gamma
41.202 84.921 61.634 90.00 108.37 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand FE, TRS enzyme Oxidoreductase E.C. BRENDA
A, B

Primary referenceThe Crucial Importance of Chemistry in the Structure-Function Link: Manipulating Hydrogen Bonding in Iron-Containing Superoxide Dismutase(,)., Yikilmaz E, Rodgers DW, Miller AF, Biochemistry. 2006 Jan 31;45(4):1151-1161. PMID:16430211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (1za5.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 1ZA5
  • CSU: Contacts of Structural Units for 1ZA5
  • Likely Quarternary Molecular Structure file(s) for 1ZA5
  • Structure Factors (376 Kb)
  • Retrieve 1ZA5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZA5 from S2C, [Save to disk]
  • Re-refined 1za5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZA5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZA5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZA5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c1za5, region A:244-326 [Jmol] [rasmolscript] [script source]
  • Fold representative 1za5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1za5] [1za5_B] [1za5_A]
  • SWISS-PROT database: [P0AGD3]
  • Domain organization of [SODF_ECOLI] by SWISSPFAM
  • Other resources with information on 1ZA5
  • Community annotation for 1ZA5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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