1ZAF Transcription Transferase date Apr 06, 2005
title Crystal Structure Of Estrogen Receptor Beta Complexed With 3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
authors R.E.Mcdevitt, M.S.Malamas, E.S.Manas, R.J.Unwalla, Z.B.Xu, C.P.Miller, H.A.Harris
compound source
Molecule: Estrogen Receptor Beta
Chain: A, B
Synonym: Er-Beta
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr2, Estrb, Nr3a2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b

Molecule: Nuclear Receptor Coactivator 1
Chain: C, D
Synonym: Ncoa-1, Steroid Receptor Coactivator-1, Src-1, Rip160, Hin-2 Protein;
Ec: 2.3.1.48
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Was Derived From Steroid Receptor Coactivator-1.
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.281 89.213 99.334 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 789 BindingDB enzyme Transferase E.C.2.3.1.48 BRENDA
Primary referenceEstrogen receptor ligands: design and synthesis of new 2-arylindene-1-ones., McDevitt RE, Malamas MS, Manas ES, Unwalla RJ, Xu ZB, Miller CP, Harris HA, Bioorg Med Chem Lett. 2005 Jun 15;15(12):3137-42. PMID:15876535
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1zaf.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 1ZAF
  • CSU: Contacts of Structural Units for 1ZAF
  • Likely Quarternary Molecular Structure file(s) for 1ZAF
  • Retrieve 1ZAF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZAF from S2C, [Save to disk]
  • View 1ZAF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZAF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZAF, from MSDmotif at EBI
  • Fold representative 1zaf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zaf_A] [1zaf_B] [1zaf] [1zaf_D] [1zaf_C]
  • SWISS-PROT database: [Q92731] [Q15788]
  • Domain organization of [ESR2_HUMAN] [NCOA1_HUMAN] by SWISSPFAM
  • Domain found in 1ZAF: [HOLI ] by SMART
  • Other resources with information on 1ZAF
  • Community annotation for 1ZAF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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