1ZC8 Rna Binding Protein Rna date Apr 11, 2005
title Coordinates Of Tmrna, Smpb, Ef-Tu And H44 Fitted Into Cryo-E The 70s Ribosome And Tmrna Complex
authors M.Valle, R.Gillet, S.Kaur, A.Henne, V.Ramakrishnan, J.Frank
compound source
Molecule: Tld 16s Ribosomal Rna
Chain: A
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: H2 16s Rrna
Chain: B
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: H2b D Mrna
Chain: C
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Protein Kinase 4 Mrna
Chain: G
Other_details: Pk1
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: H5 16s Ribosomal Rna
Chain: F
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Protein Kinase 2 Mrna
Chain: H
Other_details: Pk2
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Protein Kinase 3
Chain: I
Other_details: Pk3
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Protein Kinase 4 Mrna
Chain: J
Other_details: Pk4
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: H44 16s Ribosomal Rna
Chain: Z
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Ssra-Binding Protein
Chain: K
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Elongation Factor Tu
Chain: Y
Synonym: Ef-Tu
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 13.00 Å
Gene
Ontology
ChainFunctionProcessComponent
K


Y


Primary referenceVisualizing tmRNA entry into a stalled ribosome., Valle M, Gillet R, Kaur S, Henne A, Ramakrishnan V, Frank J, Science. 2003 Apr 4;300(5616):127-30. PMID:12677067
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1zc8.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1ZC8
  • Likely Quarternary Molecular Structure file(s) for 1ZC8
  • Retrieve 1ZC8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZC8 from S2C, [Save to disk]
    • View 1ZC8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ZC8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZC8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zc8_A] [1zc8_H] [1zc8_F] [1zc8_C] [1zc8_G] [1zc8_B] [1zc8] [1zc8_Z] [1zc8_Y] [1zc8_K] [1zc8_J] [1zc8_I]
  • SWISS-PROT database: [P60338] [O66640]
  • Domain organization of [EFTU1_THETH] [SSRP_AQUAE] by SWISSPFAM
    • Other resources with information on 1ZC8
  • Community annotation for 1ZC8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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