1ZCL Hydrolase date Apr 12, 2005
title Prl-1 C104s Mutant In Complex With Sulfate
authors J.P.Sun, W.Q.Wang, H.Yang, S.Liu, F.Liang, A.A.Fedorov, S.C.Almo, Z
compound source
Molecule: Protein Tyrosine Phosphatase 4a1
Chain: A, B
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet15b
symmetry Space Group: I 21 3
R_factor 0.261 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.681 146.681 146.681 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand SO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • phosphoprotein phosphatase a...
  • protein tyrosine phosphatase...
  • protein tyrosine/serine/thre...


  • Primary referenceStructure and Biochemical Properties of PRL-1, a Phosphatase Implicated in Cell Growth, Differentiation, and Tumor Invasion(,)., Sun JP, Wang WQ, Yang H, Liu S, Liang F, Fedorov AA, Almo SC, Zhang ZY, Biochemistry 2005 Sep 13;44(36):12009-21. PMID:16142898
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1zcl.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (1zcl.pdb2.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 1ZCL
  • CSU: Contacts of Structural Units for 1ZCL
  • Likely Quarternary Molecular Structure file(s) for 1ZCL
  • Structure Factors (81 Kb)
  • Retrieve 1ZCL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZCL from S2C, [Save to disk]
  • Re-refined 1zcl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZCL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZCL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZCL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zcl] [1zcl_A] [1zcl_B]
  • SWISS-PROT database: [Q78EG7]
  • Domain organization of [TP4A1_RAT] by SWISSPFAM
  • Domain found in 1ZCL: [PTPc_DSPc ] by SMART
  • Other resources with information on 1ZCL
  • Community annotation for 1ZCL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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