1ZD9 Transport Protein date Apr 14, 2005
title Structure Of Human Adp-Ribosylation Factor-Like 10b
authors J.Choe, A.Atanassova, C.Arrowsmith, A.Edwards, M.Sundstrom, A.Bochkarev, H.Park, Structural Genomics Consortium (Sgc)
compound source
Molecule: Adp-Ribosylation Factor-Like 10b
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.248
length a length b length c angle alpha angle beta angle gamma
61.731 72.092 36.416 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand GDP, MG enzyme
  • anterograde axonal transport...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1zd9.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1ZD9
  • CSU: Contacts of Structural Units for 1ZD9
  • Likely Quarternary Molecular Structure file(s) for 1ZD9
  • Structure Factors (120 Kb)
  • Retrieve 1ZD9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZD9 from S2C, [Save to disk]
  • Re-refined 1zd9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZD9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZD9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZD9, from MSDmotif at EBI
  • Fold representative 1zd9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zd9] [1zd9_A]
  • SWISS-PROT database: [Q96BM9]
  • Domain organization of [ARL8A_HUMAN] by SWISSPFAM
  • Domain found in 1ZD9: [small_GTPase ] by SMART
  • Other resources with information on 1ZD9
  • Community annotation for 1ZD9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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