1ZDL Oxidoreductase date Apr 14, 2005
title Crystal Structure Of Mouse Thioredoxin Reductase Type 2
authors E.I.Biterova, A.A.Turanov, V.N.Gladyshev, J.J.Barycki
compound source
Molecule: Thioredoxin Reductase 2, Mitochondrial
Chain: A
Synonym: Tr3
Ec: 1.8.1.9
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Txnrd2, Trxr2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: I 41 2 2
R_factor 0.241 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.070 109.070 204.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand FAD, NDP enzyme Oxidoreductase E.C.1.8.1.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • thioredoxin-disulfide reduct...


  • Primary referenceCrystal structures of oxidized and reduced mitochondrial thioredoxin reductase provide molecular details of the reaction mechanism., Biterova EI, Turanov AA, Gladyshev VN, Barycki JJ, Proc Natl Acad Sci U S A 2005 Oct 18;102(42):15018-23. Epub 2005 Oct 10. PMID:16217027
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (1zdl.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 1ZDL
  • CSU: Contacts of Structural Units for 1ZDL
  • Likely Quarternary Molecular Structure file(s) for 1ZDL
  • Structure Factors (93 Kb)
  • Retrieve 1ZDL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZDL from S2C, [Save to disk]
  • Re-refined 1zdl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZDL in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZDL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZDL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zdl] [1zdl_A]
  • SWISS-PROT database: [Q9JLT4]
  • Domain organization of [TRXR2_MOUSE] by SWISSPFAM
  • Other resources with information on 1ZDL
  • Community annotation for 1ZDL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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