1ZDT Transcription date Apr 14, 2005
title The Crystal Structure Of Human Steroidogenic Factor-1
authors W.Wang, C.Zhang, A.Marimuthu, H.I.Krupka, M.Tabrizizad, R.Shelloe K.Eng, H.Nguyen, C.Settachatgul, B.Powell, M.V.Milburn, B.L.West
compound source
Molecule: Steroidogenic Factor 1
Chain: A, B
Synonym: Stf-1, Sf-1, Adrenal 4 Binding Protein, Steroid Ho Receptor Ad4bp, Fushi Tarazu Factor Homolog 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Nuclear Receptor Coactivator 2
Chain: P, Q
Fragment: Residues 741-752
Synonym: Ncoa-2, Transcriptional Intermediary Factor 2
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 31 2 1
R_factor 0.216 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.601 73.601 195.678 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand PEF enzyme
related structures by homologous chain: 1YP0
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structures of human steroidogenic factor-1 and liver receptor homologue-1., Wang W, Zhang C, Marimuthu A, Krupka HI, Tabrizizad M, Shelloe R, Mehra U, Eng K, Nguyen H, Settachatgul C, Powell B, Milburn MV, West BL, Proc Natl Acad Sci U S A 2005 May 24;102(21):7505-10. Epub 2005 May 16. PMID:15897460
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (1zdt.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (1zdt.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (1zdt.pdb3.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 1ZDT
  • CSU: Contacts of Structural Units for 1ZDT
  • Likely Quarternary Molecular Structure file(s) for 1ZDT
  • Structure Factors (267 Kb)
  • Retrieve 1ZDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZDT from S2C, [Save to disk]
  • Re-refined 1zdt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZDT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZDT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zdt_A] [1zdt_Q] [1zdt_P] [1zdt] [1zdt_B]
  • SWISS-PROT database: [Q15596] [Q13285]
  • Domain organization of [NCOA2_HUMAN] [STF1_HUMAN] by SWISSPFAM
  • Domain found in 1ZDT: [HOLI ] by SMART
  • Other resources with information on 1ZDT
  • Community annotation for 1ZDT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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