1ZED	Hydrolase	date	Apr 18, 2005
title	Alkaline Phosphatase From Human Placenta In Complex With P- Nitrophenyl-Phosphonate
authors	P.Llinas, E.A.Stura, A.Menez, Z.Kiss, T.Stigbrand, J.L.Millan, M.H
compound		source
Molecule: Alkaline Phosphatase Chain: A Synonym: Plap-1, Regan Isozyme Ec: 3.1.3.1		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Placenta
symmetry	Space Group: C 2 2 21	R_factor 0.149 R_Free 0.188
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.346 114.573 106.568 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.57 Å
ligand	CA, MG, NAG, PNP, PO3, ZN	enzyme	Hydrolase E.C.3.1.3.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural studies of human placental alkaline phosphatase in complex with functional ligands., Llinas P, Stura EA, Menez A, Kiss Z, Stigbrand T, Millan JL, Le Du MH, J Mol Biol 2005 Jul 15;350(3):441-51. PMID:15946677

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk] Biological Unit Coordinates (1zed.pdb1.gz) 338 Kb LPC: Ligand-Protein Contacts for 1ZED CSU: Contacts of Structural Units for 1ZED Likely Quarternary Molecular Structure file(s) for 1ZED Structure Factors (560 Kb) Retrieve 1ZED in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZED from S2C, [Save to disk] Re-refined 1zed structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZED in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZED

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZED, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zed_A] [1zed] SWISS-PROT database: [P05187] Domain organization of [PPB1_HUMAN] by SWISSPFAM Domain found in 1ZED: [alkPPc ] by SMART

Other resources with information on 1ZED

Community annotation for 1ZED at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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