1ZH7 Transcription date Apr 22, 2005
title Structural And Biochemical Basis For Selective Repression Of Orphan Nuclear Receptor Lrh-1 By Shp
authors Y.Li, M.Choi, K.Suino, A.Kovach, J.Daugherty, S.A.Kliewer, H.E.Xu
compound source
Molecule: Orphan Nuclear Receptor Nr5a2
Chain: A, B
Fragment: Lrh-1 Ligand Binding Domain
Synonym: Liver Receptor Homolog, Lrh-1
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Nuclear Receptor Subfamily 0, Group B, Member 2
Chain: C, D
Fragment: Shp 1st Lxxll Motif

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
symmetry Space Group: C 1 2 1
R_factor 0.226 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.765 35.126 134.205 90.00 92.61 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and biochemical basis for selective repression of the orphan nuclear receptor liver receptor homolog 1 by small heterodimer partner., Li Y, Choi M, Suino K, Kovach A, Daugherty J, Kliewer SA, Xu HE, Proc Natl Acad Sci U S A 2005 Jul 5;102(27):9505-10. Epub 2005 Jun 23. PMID:15976031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (1zh7.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (1zh7.pdb2.gz) 44 Kb
  • CSU: Contacts of Structural Units for 1ZH7
  • Likely Quarternary Molecular Structure file(s) for 1ZH7
  • Structure Factors (160 Kb)
  • Retrieve 1ZH7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZH7 from S2C, [Save to disk]
  • Re-refined 1zh7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZH7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZH7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZH7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zh7_C] [1zh7] [1zh7_D] [1zh7_A] [1zh7_B]
  • SWISS-PROT database: [P97947] [P45448]
  • Domain organization of [NR0B2_RAT] [NR5A2_MOUSE] by SWISSPFAM
  • Domain found in 1ZH7: [HOLI ] by SMART
  • Other resources with information on 1ZH7
  • Community annotation for 1ZH7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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