1ZHK	Immune System	date	Apr 26, 2005
title	Crystal Structure Of Hla-B3501 Presenting 13-Mer Ebv Antige Lpeplpqgqltay
authors	F.E.Tynan, N.A.Borg, J.J.Miles, T.Beddoe, D.El-Hassen, S.L.Silins Zuylen, A.W.Purcell, L.Kjer-Nielsen, J.Mccluskey, S.R.Burrows, J
compound		source
Molecule: Hla Class I Histocompatibility Antigen, B-35 Alph Chain: A Fragment: Extracellular Domains Alpha 1 Synonym: Mhc Heavy Chain Hla-B3501, Mhc Class I Antigen B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
Molecule: Beta-2-Microglobulin Chain: B Synonym: Hdcma22p Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
Molecule: Ebv-Peptide Lpeplpqgqltay Chain: C Engineered: Yes		Synthetic: Yes Other_details: Synthetic Peptide Lpeplpqgqltay
symmetry	Space Group: P 21 21 21	R_factor 0.219 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.250 81.750 110.420 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
related structures	by homologous chain: 1M6O, 2BSV
Gene Ontology	Chain Function Process Component B cellular response to iron io...
Primary reference	The high resolution structures of highly bulged viral epitopes bound to the major histocompatability class I: Implications for T-cell receptor engagement and T-cell immunodominance., Tynan FE, Borg NA, Miles JJ, Beddoe T, El-Hassen D, Silins SL, van Zuylen WJ, Purcell AW, Kjer-Nielsen L, McCluskey J, Burrows SR, Rossjohn J, J Biol Chem 2005 Apr 22;. PMID:15849183

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (1zhk.pdb1.gz) 74 Kb CSU: Contacts of Structural Units for 1ZHK Likely Quarternary Molecular Structure file(s) for 1ZHK Structure Factors (550 Kb) Retrieve 1ZHK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZHK from S2C, [Save to disk] Re-refined 1zhk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZHK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZHK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZHK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zhk_A] [1zhk] [1zhk_C] [1zhk_B] SWISS-PROT database: [P30685] [P61769] Domain organization of [1B35_HUMAN] [B2MG_HUMAN] by SWISSPFAM Domain found in 1ZHK: [IGc1 ] by SMART

Other resources with information on 1ZHK

Community annotation for 1ZHK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---