1ZIW Immune System date Apr 27, 2005
title Human Toll-Like Receptor 3 Extracellular Domain Structure
authors I.A.Wilson, J.Choe
compound source
Molecule: Toll-Like Receptor 3
Chain: A
Fragment: Extracellular Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tlr3
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Hi 5
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 2 2 21
R_factor 0.208 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.497 155.121 119.669 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand GOL, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of Human Toll-Like Receptor 3 (TLR3) Ectodomain., Choe J, Kelker MS, Wilson IA, Science 2005 Jun 22;. PMID:15961631
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (1ziw.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 1ZIW
  • CSU: Contacts of Structural Units for 1ZIW
  • Likely Quarternary Molecular Structure file(s) for 1ZIW
  • Structure Factors (597 Kb)
  • Retrieve 1ZIW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZIW from S2C, [Save to disk]
  • Re-refined 1ziw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZIW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZIW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZIW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ziw] [1ziw_A]
  • SWISS-PROT database: [O15455]
  • Domain organization of [TLR3_HUMAN] by SWISSPFAM
  • Domains found in 1ZIW: [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART
  • Other resources with information on 1ZIW
  • Community annotation for 1ZIW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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