1ZJ6 Transport Protein date Apr 28, 2005
title Crystal Structure Of Human Arl5
authors Z.X.Wang, L.Shi, J.F.Liu, X.M.An, W.R.Chang, D.C.Liang
compound source
Molecule: Adp-Ribosylation Factor-Like Protein 5
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: I 21 21 21
R_factor 0.212 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.780 81.460 84.610 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand G3D, SO4 enzyme
related structures by homologous chain: 1YZG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference2.0A crystal structure of human ARL5-GDP3'P, a novel member of the small GTP-binding proteins., Wang ZX, Shi L, Liu JF, An XM, Chang WR, Liang DC, Biochem Biophys Res Commun 2005 Jul 8;332(3):640-5. PMID:15896705
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1zj6.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (1zj6.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (1zj6.pdb3.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1ZJ6
  • CSU: Contacts of Structural Units for 1ZJ6
  • Likely Quarternary Molecular Structure file(s) for 1ZJ6
  • Structure Factors (188 Kb)
  • Retrieve 1ZJ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZJ6 from S2C, [Save to disk]
  • Re-refined 1zj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZJ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZJ6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZJ6, from MSDmotif at EBI
  • Fold representative 1zj6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zj6_A] [1zj6]
  • SWISS-PROT database: [Q9Y689]
  • Domain organization of [ARL5A_HUMAN] by SWISSPFAM
  • Domain found in 1ZJ6: [ARF ] by SMART
  • Other resources with information on 1ZJ6
  • Community annotation for 1ZJ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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